JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0720.1 Shox2 Mus musculus Homeo Paired-related
MA0720.2 Shox2 Mus musculus Homeo Paired-related
MA0721.1 UNCX Homo sapiens Homeo Paired-related
MA0721.2 UNCX Homo sapiens Homeo Paired-related
MA0722.1 VAX1 Homo sapiens Homeo NK
MA0722.2 VAX1 Homo sapiens Homeo NK
MA0723.1 VAX2 Homo sapiens Homeo NK
MA0723.2 VAX2 Homo sapiens Homeo NK
MA0723.3 VAX2 Homo sapiens Homeo NK
MA0724.1 VENTX Homo sapiens Homeo NK
MA0725.1 VSX1 Homo sapiens Homeo Paired-related
MA0725.2 VSX1 Homo sapiens Homeo Paired-related
MA0726.1 VSX2 Homo sapiens Homeo Paired-related
MA0726.2 VSX2 Homo sapiens Homeo Paired-related
MA0727.1 NR3C2 Homo sapiens Nuclear Steroid
MA0727.2 NR3C2 Homo sapiens Nuclear Steroid
MA0728.1 Nr2F6 Mus musculus Nuclear RXR-related
MA0729.1 RARA Homo sapiens Nuclear Thyroid
MA0730.1 RARA Homo sapiens Nuclear Thyroid
MA0731.1 BCL6B Homo sapiens C2H2 More
MA0732.1 EGR3 Homo sapiens C2H2 Three-zinc
MA0732.2 EGR3 Homo sapiens C2H2 Three-zinc
MA0733.1 EGR4 Homo sapiens C2H2 Three-zinc
MA0733.2 EGR4 Homo sapiens C2H2 Three-zinc
MA0734.1 GLI2 Homo sapiens C2H2 More
Showing 25 profiles of page 58 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.