JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0707.3 MNX1 Homo sapiens Homeo HOX
MA0708.1 MSX2 Homo sapiens Homeo NK
MA0708.2 MSX2 Homo sapiens Homeo NK
MA0708.3 MSX2 Homo sapiens Homeo NK
MA0709.1 Msx3 Mus musculus Homeo NK
MA0709.2 Msx3 Mus musculus Homeo NK
MA0710.1 NOTO Homo sapiens Homeo NK
MA0710.2 NOTO Homo sapiens Homeo NK
MA0711.1 OTX1 Homo sapiens Homeo Paired-related
MA0711.2 OTX1 Homo sapiens Homeo Paired-related
MA0712.1 OTX2 Homo sapiens Homeo Paired-related
MA0712.2 OTX2 Homo sapiens Homeo Paired-related
MA0712.3 OTX2 Homo sapiens Homeo Paired-related
MA0713.1 PHOX2A Homo sapiens Homeo Paired-related
MA0714.1 PITX3 Homo sapiens Homeo Paired-related
MA0714.2 PITX3 Homo sapiens Homeo Paired-related
MA0715.1 PROP1 Homo sapiens Homeo Paired-related
MA0716.1 PRRX1 Homo sapiens Homeo Paired-related
MA0716.2 PRRX1 Homo sapiens Homeo Paired-related
MA0717.1 RAX2 Homo sapiens Homeo Paired-related
MA0717.2 RAX2 Homo sapiens Homeo Paired-related
MA0718.1 RAX Homo sapiens Homeo Paired-related
MA0718.2 RAX Homo sapiens Homeo Paired-related
MA0719.1 RHOXF1 Homo sapiens Homeo Paired-related
MA0719.2 RHOXF1 Homo sapiens Homeo Paired-related
Showing 25 profiles of page 57 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.