JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0614.1 Foxj2 Mus musculus Fork FOX
MA0615.1 Gmeb1 Mus musculus SAND GMEB
MA0615.2 Gmeb1 Mus musculus SAND GMEB
MA0616.1 Hes2 Mus musculus Basic Hairy-related
MA0616.2 HES2 Homo sapiens Basic Hairy-related
MA0616.3 HES2 Homo sapiens Basic Hairy-related
MA0618.1 LBX1 Homo sapiens Homeo NK
MA0618.2 LBX1 Homo sapiens Homeo NK
MA0619.1 LIN54 Gallus gallus CRC tesmin/TSO1-family
MA0619.2 LIN54 Gallus gallus CRC tesmin/TSO1-family
MA0620.1 Mitf Mus musculus Basic bHLH-ZIP
MA0620.2 MITF Homo sapiens Basic bHLH-ZIP
MA0620.3 MITF Homo sapiens Basic bHLH-ZIP
MA0620.4 MITF Homo sapiens Basic bHLH-ZIP
MA0621.1 mix-a Xenopus laevis Homeo Paired-related
MA0621.2 mix-a Xenopus laevis Homeo Paired-related
MA0622.1 Mlxip Mus musculus Basic bHLH-ZIP
MA0622.2 Mlxip Mus musculus Basic bHLH-ZIP
MA0623.1 Neurog1 Mus musculus Basic Tal-related
MA0623.2 NEUROG1 Homo sapiens Basic Tal-related
MA0624.1 NFATC1 Meleagris gallopavo Rel NFAT-related
MA0624.2 Nfatc1 Mus musculus Rel NFAT-related
MA0624.3 Nfatc1 Mus musculus Rel NFAT-related
MA0625.1 NFATC3 Homo sapiens Rel NFAT-related
MA0625.2 NFATC3 Homo sapiens Rel NFAT-related
Showing 25 profiles of page 49 from 172 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.