JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0550.2 BZR1 Arabidopsis thaliana Basic BES/BZR
MA0550.3 BZR1 Arabidopsis thaliana Basic BES/BZR
MA0551.1 HY5 Arabidopsis thaliana Basic Group
MA0551.2 HY5 Arabidopsis thaliana Basic Group
MA0552.1 PIF1 Arabidopsis thaliana Basic bHLH
MA0552.2 PIF1 Arabidopsis thaliana Basic bHLH
MA0553.1 SMZ Arabidopsis thaliana AP2/EREBP AP2
MA0554.1 SOC1 Arabidopsis thaliana MADS Type
MA0554.2 SOC1 Arabidopsis thaliana MADS Type
MA0555.1 SVP Arabidopsis thaliana MADS Type
MA0555.2 SVP Arabidopsis thaliana MADS Type
MA0556.1 AP3 Arabidopsis thaliana MADS Type
MA0556.2 AP3 Arabidopsis thaliana MADS Type
MA0557.1 FHY3 Arabidopsis thaliana GCM FRS/FRF
MA0557.2 FHY3 Arabidopsis thaliana GCM FRS/FRF
MA0558.1 FLC Arabidopsis thaliana MADS Type
MA0558.2 FLC Arabidopsis thaliana MADS Type
MA0559.1 PI Arabidopsis thaliana MADS MIKC
MA0560.1 PIF3 Arabidopsis thaliana Basic bHLH
MA0560.2 PIF3 Arabidopsis thaliana Basic bHLH
MA0561.1 PIF4 Arabidopsis thaliana Basic bHLH
MA0562.1 PIF5 Arabidopsis thaliana Basic bHLH
MA0563.1 SEP3 Arabidopsis thaliana MADS Type
MA0563.2 SEP3 Arabidopsis thaliana MADS Type
MA0564.1 ABI3 Arabidopsis thaliana B3 LAV
Showing 25 profiles of page 44 from 172 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.