JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0707.3 MNX1 Homo sapiens Homeo HOX
MA0708.1 MSX2 Homo sapiens Homeo NK
MA0708.2 MSX2 Homo sapiens Homeo NK
MA0708.3 MSX2 Homo sapiens Homeo NK
MA0709.1 Msx3 Mus musculus Homeo NK
MA0709.2 Msx3 Mus musculus Homeo NK
MA0710.1 NOTO Homo sapiens Homeo NK
MA0710.2 NOTO Homo sapiens Homeo NK
MA0711.1 OTX1 Homo sapiens Homeo Paired-related
MA0711.2 OTX1 Homo sapiens Homeo Paired-related
MA0712.1 OTX2 Homo sapiens Homeo Paired-related
MA0712.2 OTX2 Homo sapiens Homeo Paired-related
MA0712.3 OTX2 Homo sapiens Homeo Paired-related
MA0713.1 PHOX2A Homo sapiens Homeo Paired-related
MA0714.1 PITX3 Homo sapiens Homeo Paired-related
MA0714.2 PITX3 Homo sapiens Homeo Paired-related
MA0715.1 PROP1 Homo sapiens Homeo Paired-related
MA0716.1 PRRX1 Homo sapiens Homeo Paired-related
MA0716.2 PRRX1 Homo sapiens Homeo Paired-related
MA0717.1 RAX2 Homo sapiens Homeo Paired-related
MA0717.2 RAX2 Homo sapiens Homeo Paired-related
MA0718.1 RAX Homo sapiens Homeo Paired-related
MA0718.2 RAX Homo sapiens Homeo Paired-related
MA0719.1 RHOXF1 Homo sapiens Homeo Paired-related
MA0719.2 RHOXF1 Homo sapiens Homeo Paired-related
MA0720.1 Shox2 Mus musculus Homeo Paired-related
MA0720.2 Shox2 Mus musculus Homeo Paired-related
MA0721.1 UNCX Homo sapiens Homeo Paired-related
MA0721.2 UNCX Homo sapiens Homeo Paired-related
MA0722.1 VAX1 Homo sapiens Homeo NK
MA0722.2 VAX1 Homo sapiens Homeo NK
MA0723.1 VAX2 Homo sapiens Homeo NK
MA0723.2 VAX2 Homo sapiens Homeo NK
MA0723.3 VAX2 Homo sapiens Homeo NK
MA0724.1 VENTX Homo sapiens Homeo NK
MA0725.1 VSX1 Homo sapiens Homeo Paired-related
MA0725.2 VSX1 Homo sapiens Homeo Paired-related
MA0726.1 VSX2 Homo sapiens Homeo Paired-related
MA0726.2 VSX2 Homo sapiens Homeo Paired-related
MA0727.1 NR3C2 Homo sapiens Nuclear Steroid
MA0727.2 NR3C2 Homo sapiens Nuclear Steroid
MA0728.1 Nr2F6 Mus musculus Nuclear RXR-related
MA0729.1 RARA Homo sapiens Nuclear Thyroid
MA0730.1 RARA Homo sapiens Nuclear Thyroid
MA0731.1 BCL6B Homo sapiens C2H2 More
MA0732.1 EGR3 Homo sapiens C2H2 Three-zinc
MA0732.2 EGR3 Homo sapiens C2H2 Three-zinc
MA0733.1 EGR4 Homo sapiens C2H2 Three-zinc
MA0733.2 EGR4 Homo sapiens C2H2 Three-zinc
MA0734.1 GLI2 Homo sapiens C2H2 More
Showing 50 profiles of page 29 from 86 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.