JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2327.1 PGR Homo sapiens Nuclear Steroid
MA2328.1 ZBED4 Homo sapiens C2H2 BED
MA2329.1 ZBTB11 Homo sapiens C2H2 More
MA2330.1 ZBTB24 Homo sapiens C2H2 More
MA2331.1 ZNF157 Homo sapiens C2H2 More
MA2332.1 ZNF175 Homo sapiens C2H2 More
MA2333.1 ZNF35 Homo sapiens C2H2 More
MA2334.1 ZNF547 Homo sapiens C2H2 More
MA2335.1 ZNF558 Homo sapiens C2H2 More
MA2336.1 ZSCAN21 Homo sapiens C2H2 More
MA2337.1 Nr1h3 Mus musculus Nuclear Thyroid
MA2338.1 Ppara Mus musculus Nuclear Thyroid
MA2339.1 Nanog Mus musculus Homeo NK
MA2340.1 Zbtb2 Mus musculus C2H2 Factors
MA2341.1 FEZF2 Homo sapiens C2H2 More
MA2342.1 URI Arabidopsis thaliana Basic bHLH
MA2343.1 MYB3R3 Arabidopsis thaliana Tryptophan MYB
MA2344.1 REV Arabidopsis thaliana Homeo HD-ZIP
MA2345.1 OS02G0104500 Oryza sativa Tryptophan Trihelix
MA2346.1 OsTCP7 Oryza sativa TCP
MA2347.1 OS04G0486400 Oryza sativa Tryptophan Trihelix
MA2348.1 IDD6 Arabidopsis thaliana C2H2 IDD
MA2349.1 OsCCA1 Oryza sativa Tryptophan MYB-related
MA2350.1 OsFBH1 Oryza sativa Basic bHLH
MA2351.1 OsEIL3 Oryza sativa Other EIL
Showing 25 profiles of page 167 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.