JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2152.1 ref-1 Caenorhabditis elegans Basic Hairy-related
MA2153.1 sex-1 Caenorhabditis elegans Nuclear Thyroid
MA2154.1 snai-1 Caenorhabditis elegans C2H2 More
MA2155.1 sptf-3 Caenorhabditis elegans C2H2 Three-zinc
MA2156.1 xbp-1 Caenorhabditis elegans Basic XBP-1-related
MA2157.1 atfs-1 Caenorhabditis elegans Basic ATF-4-related
MA2158.1 ceh-14 Caenorhabditis elegans Homeo HD-LIM
MA2159.1 ceh-36 Caenorhabditis elegans Homeo Paired-related
MA2160.1 ceh-39 Caenorhabditis elegans Homeo HD-CUT
MA2161.1 ceh-43 Caenorhabditis elegans Homeo NK
MA2162.1 ceh-60 Caenorhabditis elegans Homeo TALE-type
MA2163.1 cnd-1 Caenorhabditis elegans Basic Tal-related
MA2164.1 egl-27 Caenorhabditis elegans Other C4-GATA-related
MA2165.1 elt-1 Caenorhabditis elegans Other C4-GATA-related
MA2166.1 ets-7 Caenorhabditis elegans Tryptophan Ets-related
MA2167.1 fkh-3 Caenorhabditis elegans Fork FOX
MA2168.1 hif-1 Caenorhabditis elegans Basic PAS
MA2169.1 hsf-1 Caenorhabditis elegans Heat HSF
MA2170.1 lin-32 Caenorhabditis elegans Basic Tal-related
MA2171.1 lsl-1 Caenorhabditis elegans C2H2 More
MA2172.1 mdl-1 Caenorhabditis elegans Basic bHLH-ZIP
MA2173.1 mef-2 Caenorhabditis elegans MADS Regulators
MA2174.1 mls-2 Caenorhabditis elegans Homeo NK
MA2175.1 mxl-1 Caenorhabditis elegans Basic bHLH-ZIP
MA2176.1 mxl-3 Caenorhabditis elegans Basic bHLH-ZIP
Showing 25 profiles of page 160 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.