JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1584.1 ZIC5 Homo sapiens C2H2 More
MA1584.2 ZIC5 Homo sapiens C2H2 More
MA1585.1 ZKSCAN1 Homo sapiens C2H2 More
MA1585.2 ZKSCAN1 Homo sapiens C2H2 More
MA1587.1 ZNF135 Homo sapiens C2H2 More
MA1588.1 ZNF136 Homo sapiens C2H2 More
MA1589.1 ZNF140 Homo sapiens C2H2 More
MA1589.2 ZNF140 Homo sapiens C2H2 More
MA1592.1 ZNF274 Homo sapiens C2H2 More
MA1592.2 ZNF274 Homo sapiens C2H2 More
MA1593.1 ZNF317 Homo sapiens C2H2 More
MA1593.2 ZNF317 Homo sapiens C2H2 More
MA1594.1 ZNF382 Homo sapiens C2H2 Factors
MA1596.1 ZNF460 Homo sapiens C2H2 More
MA1597.1 ZNF528 Homo sapiens C2H2 More
MA1599.1 ZNF682 Homo sapiens C2H2 More
MA1599.2 ZNF682 Homo sapiens C2H2 More
MA1600.1 ZNF684 Homo sapiens C2H2 More
MA1600.2 ZNF684 Homo sapiens C2H2 More
MA1601.1 ZNF75D Homo sapiens C2H2 More
MA1601.2 ZNF75D Homo sapiens C2H2 More
MA1602.1 ZSCAN29 Homo sapiens C2H2 More
MA1602.2 ZSCAN29 Homo sapiens C2H2 More
MA1603.1 Dmrt1 Mus musculus DM-type DMRT
MA1603.2 Dmrt1 Mus musculus DM-type DMRT
Showing 25 profiles of page 122 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.