JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1556.1 RXRG Homo sapiens Nuclear RXR-related
MA1557.1 SMAD5 Homo sapiens SMAD/NF-1 SMAD
MA1558.1 SNAI1 Homo sapiens C2H2 More
MA1558.2 SNAI1 Homo sapiens C2H2 More
MA1559.1 SNAI3 Homo sapiens C2H2 More
MA1559.2 SNAI3 Homo sapiens C2H2 More
MA1560.1 SOHLH2 Homo sapiens Basic PAS
MA1560.2 SOHLH2 Homo sapiens Basic PAS
MA1561.1 SOX12 Homo sapiens High-mobility SOX-related
MA1561.2 SOX12 Homo sapiens High-mobility SOX-related
MA1562.1 SOX14 Homo sapiens High-mobility SOX-related
MA1562.2 SOX14 Homo sapiens High-mobility SOX-related
MA1563.1 SOX18 Homo sapiens High-mobility SOX-related
MA1563.2 SOX18 Homo sapiens High-mobility SOX-related
MA1564.1 SP9 Homo sapiens C2H2 Three-zinc
MA1564.2 SP9 Homo sapiens C2H2 Three-zinc
MA1565.1 TBX18 Homo sapiens T-Box TBX1-related
MA1565.2 TBX18 Homo sapiens T-Box TBX1-related
MA1566.1 TBX3 Homo sapiens T-Box TBX2-related
MA1566.2 TBX3 Homo sapiens T-Box TBX2-related
MA1566.3 TBX3 Homo sapiens T-Box TBX2-related
MA1567.1 TBX6 Homo sapiens T-Box TBX6-related
MA1567.2 Tbx6 Mus musculus T-Box TBX6-related
MA1567.3 Tbx6 Mus musculus T-Box TBX6-related
MA1568.1 TCF21 Homo sapiens Basic Tal-related
Showing 25 profiles of page 120 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.