JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1541.1 NR6A1 Homo sapiens Nuclear GCNF-related
MA1541.2 NR6A1 Homo sapiens Nuclear GCNF-related
MA1542.1 OSR1 Homo sapiens C2H2 Other
MA1542.2 OSR1 Homo sapiens C2H2 Other
MA1544.1 OVOL1 Homo sapiens C2H2 More
MA1544.2 OVOL1 Homo sapiens C2H2 More
MA1545.1 OVOL2 Homo sapiens C2H2 More
MA1545.2 OVOL2 Homo sapiens C2H2 More
MA1546.1 PAX3 Homo sapiens Paired Paired
MA1546.2 PAX3 Homo sapiens Paired Paired
MA1547.1 PITX2 Homo sapiens Homeo Paired-related
MA1547.2 PITX2 Homo sapiens Homeo Paired-related
MA1548.1 PLAGL2 Homo sapiens C2H2 More
MA1548.2 PLAGL2 Homo sapiens C2H2 More
MA1549.1 POU6F1 Homo sapiens Homeo POU
MA1549.2 POU6F1 Homo sapiens Homeo POU
MA1550.1 PPARD Homo sapiens Nuclear Thyroid
MA1550.2 PPARD Homo sapiens Nuclear Thyroid
MA1552.1 RARB Homo sapiens Nuclear Thyroid
MA1552.2 RARB Homo sapiens Nuclear Thyroid
MA1553.1 RARG Homo sapiens Nuclear Thyroid
MA1553.2 RARG Homo sapiens Nuclear Thyroid
MA1554.1 RFX7 Homo sapiens Fork RFX-related
MA1554.2 RFX7 Homo sapiens Fork RFX-related
MA1555.1 RXRB Homo sapiens Nuclear RXR-related
Showing 25 profiles of page 119 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.