JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1516.1 KLF3 Homo sapiens C2H2 Three-zinc
MA1516.2 KLF3 Homo sapiens C2H2 Three-zinc
MA1517.1 KLF6 Homo sapiens C2H2 Three-zinc
MA1517.2 KLF6 Homo sapiens C2H2 Three-zinc
MA1518.1 LHX1 Homo sapiens Homeo HD-LIM
MA1518.2 Lhx1 Mus musculus Homeo HD-LIM
MA1518.3 Lhx1 Mus musculus Homeo HD-LIM
MA1519.1 LHX5 Homo sapiens Homeo HD-LIM
MA1519.2 LHX5 Homo sapiens Homeo HD-LIM
MA1520.1 MAF Homo sapiens Basic Maf-related
MA1520.2 MAF Homo sapiens Basic Maf-related
MA1521.1 MAFA Homo sapiens Basic Maf-related
MA1521.2 MAFA Homo sapiens Basic Maf-related
MA1522.1 MAZ Homo sapiens C2H2 More
MA1522.2 MAZ Homo sapiens C2H2 More
MA1523.1 MSANTD3 Homo sapiens Tryptophan Myb/SANT
MA1523.2 MSANTD3 Homo sapiens Tryptophan Myb/SANT
MA1524.1 MSGN1 Homo sapiens Basic Tal-related
MA1524.2 Msgn1 Mus musculus Basic Tal-related
MA1524.3 Msgn1 Mus musculus Basic Tal-related
MA1525.1 NFATC4 Homo sapiens Rel NFAT-related
MA1525.2 NFATC4 Homo sapiens Rel NFAT-related
MA1525.3 NFATC4 Homo sapiens Rel NFAT-related
MA1527.1 NFIC Homo sapiens SMAD/NF-1 Nuclear
MA1527.2 NFIC Homo sapiens SMAD/NF-1 Nuclear
Showing 25 profiles of page 117 from 172 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.