JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1487.1 FOXE1 Homo sapiens Fork FOX
MA1487.2 FOXE1 Homo sapiens Fork FOX
MA1487.3 FOXE1 Homo sapiens Fork FOX
MA1489.1 FOXN3 Homo sapiens Fork FOX
MA1491.1 GLI3 Homo sapiens C2H2 More
MA1491.2 GLI3 Homo sapiens C2H2 More
MA1491.3 GLI3 Homo sapiens C2H2 More
MA1493.1 HES6 Homo sapiens Basic Hairy-related
MA1494.1 HNF4A Homo sapiens Nuclear RXR-related
MA1494.2 HNF4A Homo sapiens Nuclear RXR-related
MA1495.1 HOXA1 Homo sapiens Homeo HOX
MA1495.2 HOXA1 Homo sapiens Homeo HOX
MA1496.1 HOXA4 Homo sapiens Homeo HOX
MA1496.2 HOXA4 Homo sapiens Homeo HOX
MA1497.1 HOXA6 Homo sapiens Homeo HOX
MA1497.2 HOXA6 Homo sapiens Homeo HOX
MA1498.1 HOXA7 Homo sapiens Homeo HOX
MA1498.2 HOXA7 Homo sapiens Homeo HOX
MA1498.3 HOXA7 Homo sapiens Homeo HOX
MA1499.1 HOXB4 Homo sapiens Homeo HOX
MA1499.2 HOXB4 Homo sapiens Homeo HOX
MA1500.1 HOXB6 Homo sapiens Homeo HOX
MA1500.2 HOXB6 Homo sapiens Homeo HOX
MA1501.1 HOXB7 Homo sapiens Homeo HOX
MA1501.2 HOXB7 Homo sapiens Homeo HOX
Showing 25 profiles of page 115 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.